Commit Graph

139 Commits

Author SHA1 Message Date
Ihor Radchenko 27d6f8305c
lisp/ob-comint.el: Introduce a fallback prompt regexp
* lisp/ob-comint.el (org-babel-comint-prompt-regexp-old): New variable
storing the default value of `comint-prompt-regexp' to be used when
the prompt set by Org mode changes for some reason.
(org-babel-comint-fallback-regexp-threshold): New customization to set
the time Org babel waits for comint command to finish until trying
fallback prompt regexp.
(org-babel-comint--set-fallback-prompt): New internal function that
sets the fallback prompt regexp, if there is any available.
(org-babel-comint-with-output):
(org-babel-comint-wait-for-output): Try fallback prompt regexp when we
cannot find comint command end for too long.
* lisp/ob-haskell.el (org-babel-interpret-haskell):
* lisp/ob-ruby.el (org-babel-ruby-initiate-session):
* lisp/ob-shell.el (org-babel-sh-initiate-session):
* lisp/ob-clojure.el (ob-clojure-eval-with-inf-clojure): Set
`org-babel-comint-prompt-regexp-old' when initializing the inferior
shell.
* etc/ORG-NEWS (New option
~org-babel-comint-fallback-regexp-threshold~): Document the new
customization.

Reported-by: Jack Kamm <jackkamm@tatersworld.org>
Link: https://orgmode.org/list/87sf2q9ubd.fsf@gmail.com
2024-02-09 17:35:58 +01:00
Kyle Meyer 72a2db86d9 Merge branch 'bugfix' 2024-01-06 16:02:02 -05:00
Po Lu 9f1d6dfd73 Backport commit 8e1c56ae4 from Emacs
; Add 2024 to copyright years
8e1c56ae46754dd7baedff49a464f078f0e9912d
Po Lu
Tue Jan 2 09:47:10 2024 +0800
2024-01-06 15:48:23 -05:00
Daniel Kraus 880782660a
ob-clojure.el: Reword docstring for ob-clojure-eval-with-cider
* lisp/ob-clojure.el (ob-clojure-eval-with-cider): Mention in the
docstring that the Babel params argument is not used anymore.
2023-03-23 13:25:15 +01:00
Daniel Kraus cd2355a204
ob-clojure.el: Fix compiler warning
* lisp/ob-clojure.el (ob-clojure-eval-with-cider): Silence compiler
warning about unused argument 'params'.
2023-03-19 21:39:07 +01:00
Daniel Kraus 6efb073463
ob-clojure.el: Fix results output, support clojure-cli
* lisp/ob-clojure.el (org-babel-clojure-backend): Add support for
clojure-cli.
* lisp/ob-clojure.el (org-babel-clojurescript-backend): Move nbb to
clojurescript.
* lisp/ob-clojure.el (org-babel-expand-body:clojure)
* lisp/ob-clojure.el (ob-clojure-eval-with-cider): Return only the
last expression when :results is not set or value, and return only
stdout when :results is set to output.
* lisp/ob-clojure.el (ob-clojure-eval-with-cmd): Rename function as
it is not only for babashka.
* lisp/ob-clojure.el (org-babel-execute:clojure): Differentiate
between Clojure and ClojureScript source blocks.

The problem was that the ob-clojure results where not correctly
taking the results parameter into account.
E.g. with the cider backend, you would get all printed or returned
values for each line in your block:

(def small-map {:a 2 :b 4 :c 8})
{:some :map}
(prn :xx)
(:b small-map)

| #'user/small-map |
| {:some :map}     |
| 4                |

or for babashka you would only get the printed values but not the
last return value:
(def small-map {:a 2 :b 4 :c 8})
{:some :map}
(prn :xx)
(:b small-map)

: :xx

Now when you specify :results value, the result is only the last
returned value, and with :results output you get all values
printed to stdout.
So the examples above would all result in the same:
(def small-map {:a 2 :b 4 :c 8})
{:some :map}
(prn :xx)
(:b small-map)

: 4
2023-03-16 11:25:41 +01:00
Ihor Radchenko fe92a3cedb
Provide a uniform way to inform users about missing third-party packages
* lisp/org-macs.el (org-require-package): New macro trying to load a
library and displaying custom error message or warning on failure.
The actual package (not library) name can be provided as optional
argument.

* lisp/ob-R.el (org-babel-R-initiate-session):
* lisp/ob-clojure.el (ob-clojure-eval-with-inf-clojure):
(ob-clojure-eval-with-cider):
(ob-clojure-eval-with-slime):
* lisp/ob-forth.el (org-babel-forth-session-execute):
* lisp/ob-gnuplot.el (org-babel-execute:gnuplot):
(org-babel-gnuplot-initiate-session):
* lisp/ob-haskell.el (org-babel-interpret-haskell):
(org-babel-haskell-initiate-session):
* lisp/ob-js.el (org-babel-execute:js):
(org-babel-js-initiate-session):
* lisp/ob-julia.el (org-babel-julia-initiate-session):
* lisp/ob-lisp.el (org-babel-execute:lisp):
* lisp/ob-ocaml.el (org-babel-prep-session:ocaml):
* lisp/ob-octave.el (org-babel-octave-initiate-session):
* lisp/ob-processing.el (org-babel-processing-view-sketch):
* lisp/ob-ruby.el (org-babel-execute:ruby):
(org-babel-ruby-initiate-session):
* lisp/ol-bbdb.el (org-bbdb-open):
(org-bbdb-complete-link):
(org-bbdb-anniv-export-ical):
* lisp/org-agenda.el:
* lisp/org-plot.el (org-plot/gnuplot):
* lisp/org.el:
* lisp/ox-ascii.el (org-ascii-table):
* lisp/ox-html.el (org-html-htmlize-generate-css):
* lisp/ox-org.el: Use the new macro.

* lisp/oc-csl.el: Add FIXME. oc-csl uses a custom function doing
similar job.

* lisp/ob-js.el (org-babel-js-initiate-session): Add FIXME noting that
the third-party package is outdated.
2023-02-17 17:09:23 +03:00
Eli Zaretskii e0815d7545 Backport commit cae528457 from Emacs
; Add 2023 to copyright years.
cae528457cb862dc886a34240c9d4c73035b6659
Eli Zaretskii
Sun Jan 1 05:31:12 2023 -0500
2023-01-01 12:44:47 -05:00
Stefan Kangas c8b0a0d1b6 Backport commit a15cd5504 from Emacs
; Don't quote nil in comments
a15cd55044c6bb4d4e9f9aec23b8b5b9cbcb38ac
Stefan Kangas
Thu Dec 15 02:35:00 2022 +0100
2022-12-17 17:01:59 -05:00
Mattias Engdegård 9b856c273f Backport commit 4b2f5425d from Emacs
* lisp/ob-clojure.el
(ob-clojure-babashka-command, ob-clojure-nbb-command):
Account for the possibility of nil (commands absent).
* lisp/org.el (org-safe-remote-resources):
* lisp/ox-md.el (org-md-toplevel-hlevel):
Fix incorrect or invalid types.

Fix types in various defcustom declarations
4b2f5425d7af1a6f992ad8ce0a4452a2e778815a
Mattias Engdegård
Thu Dec 1 13:03:19 2022 +0100

[km] The natnum change will be adjusted in an upcoming commit because
     natnum not available until Emacs 28.
2022-12-01 17:25:58 -05:00
Ihor Radchenko 5a10517d02
Add missing :package-version tags in changed `defcustom'
* lisp/ob-clojure.el (ob-clojure-babashka-command):
(ob-clojure-nbb-command):
* lisp/ob-exp.el (org-babel-exp-code-template):
* lisp/ob-latex.el (org-babel-latex-pdf-svg-process):
* lisp/org-agenda.el (org-agenda-show-outline-path):
* lisp/org-capture.el (org-capture-templates):
* lisp/org-clock.el (org-clocktable-defaults):
* lisp/org-persist.el (org-persist-directory):
(org-persist-remote-files):
(org-persist-default-expiry):
* lisp/org-refile.el (org-refile-use-outline-path):
* lisp/org-src.el (org-src-lang-modes):
* lisp/org.el (org-resource-download-policy):
(org-safe-remote-resources):
(org-time-stamp-custom-formats):
(org-property-separators):
(org-preview-latex-process-alist):
(org-structure-template-alist):
* lisp/ox-latex.el (org-latex-inline-image-rules):
(org-latex-src-block-backend):
(org-latex-engraved-options):
(org-latex-engraved-theme):
* lisp/ox-md.el (org-md-toplevel-hlevel):
* lisp/ox-texinfo.el (org-texinfo-with-latex): Add :package-version
keywords to the new custom options, and those with the value or
meaning changed.
2022-11-13 15:29:15 +08:00
Daniel Kraus bd68ece99c
ob-clojure.el: Auto detect backend
* lisp/ob-clojure.el (org-babel-clojure-backend): Set the backend
to an available cli program or elisp package.
2022-10-30 12:18:58 +01:00
Daniel Kraus a51cf1cc6b
ob-clojure.el: Fix bug with inline comments
* lisp/ob-clojure.el (ob-clojure-eval-with-cider): Filter out
  nil values from cider evaluation.
2022-10-29 22:22:12 +02:00
Daniel Kraus 0e175f11fd
lisp/ob-clojure.el: Fix header argument :var binding
* lisp/ob-clojure.el (org-babel-expand-body:clojure): Always quote
the variables passed from org-mode in Clojure let binding.
When a variable is a table or list, it's value is "(..data..)"
and without quotes, Clojure would try to execute the first
value as a function.
2022-10-28 11:50:03 +02:00
Bastien efcfaca72d lisp/ob-clojure.el: Update headers 2022-10-28 10:48:16 +02:00
stardiviner 601ce688d5
lisp/ob-clojure.el: Fix :backend override not work with `org-babel-clojure-backend'
* lisp/ob-clojure.el (org-babel-expand-body:clojure): When The source
block specified header argument :backend, the global option
`org-babel-clojure-backend' value is default 'cider, the
`cider-buffer-ns` is not void error.
2022-10-13 10:51:19 +08:00
Chris Clark 4d07df718b
ob-clojure.el: Add a :backend header arg to clojure code blocks
* ob-clojure.el (org-babel-header-args:clojure,
org-babel-execute:clojure): Add a :backend header arg that can
override the configured `org-babel-clojure-backend'.

TINYCHANGE
2022-10-11 10:49:56 +08:00
Bastien c536832308 lisp/ob-clojure.el: Add Daniel Kraus as maintainer 2022-09-27 21:36:51 +02:00
Daniel Kraus 764642f55b ob-clojure.el: Add support for babashka and nbb backend
* lisp/ob-clojure.el: Add support for babashka and nbb backend.
2022-09-25 05:07:28 +02:00
Ihor Radchenko e81a094383
Assert all the Org files to load the same Org version
* lisp/org-compat.el (org-assert-version): New macro comparing Org
version at compile time and laod time.

Add `org-assert-version' call to all files:

* lisp/org-macs.el:
* lisp/org-crypt.el:
* lisp/org-ctags.el:
* lisp/org-cycle.el:
* lisp/org-datetree.el:
* lisp/org-duration.el:
* lisp/org-element.el (avl-tree):
* lisp/org-entities.el:
* lisp/org-faces.el:
* lisp/org-feed.el:
* lisp/org-fold-core.el:
* lisp/org-fold.el:
* lisp/org-footnote.el:
* lisp/org-goto.el:
* lisp/org-habit.el:
* lisp/org-id.el:
* lisp/org-indent.el:
* lisp/org-inlinetask.el:
* lisp/org-keys.el:
* lisp/org-lint.el:
* lisp/org-list.el:
* lisp/org-macro.el:
* lisp/org-mobile.el:
* lisp/org-mouse.el:
* lisp/org-num.el:
* lisp/org-pcomplete.el:
* lisp/org-persist.el:
* lisp/org-plot.el:
* lisp/org-protocol.el:
* lisp/org-refile.el:
* lisp/org-src.el:
* lisp/org-table.el:
* lisp/org-tempo.el:
* lisp/org-timer.el:
* lisp/org.el:
* lisp/ox-ascii.el:
* lisp/ox-beamer.el:
* lisp/ox-html.el:
* lisp/ox-icalendar.el:
* lisp/ox-koma-letter.el:
* lisp/ox-latex.el:
* lisp/ox-man.el:
* lisp/ox-md.el:
* lisp/ox-odt.el:
* lisp/ox-org.el:
* lisp/ox-publish.el:
* lisp/ox-texinfo.el:
* lisp/ox.el:
2022-09-04 12:24:55 +08:00
Stefan Kangas 13d97ee18c
Prefer "website" to "homepage"
Emacs now advises using "website" (instead of "homepage") and
consequently to use the "URL" comment header instead of "Homepage".

* README:
* README_ELPA:
* doc/org-guide.org (Creating Footnotes):
* doc/org-manual.org (Creating Footnotes):
* etc/styles/README (URL): Prefer "website" to "homepage".

* lisp/*.el:
* mk/org-fixup.el: Replace the "Homepage" header comment with "URL".
2022-06-26 10:10:48 +08:00
Kyle Meyer 5a229cbc44 Update copyright year to 2022 2022-01-01 15:17:08 -05:00
Stefan Kangas 2e1c984153 Prefer HTTPS to HTTP in most links 2021-03-21 15:21:22 -04:00
Kyle Meyer 291993888d Merge branch 'maint' 2021-01-01 15:02:10 -05:00
Kyle Meyer 99eafe3787 Update copyright year to 2021 2021-01-01 14:59:01 -05:00
Bastien eecc491f1c lisp/ob-clojure.el: Add bzg@gnu.org as the maintainer 2020-10-26 08:55:32 +01:00
Bastien 10cd894b23 ob-clojure.el: More minor refinements
* lisp/ob-clojure.el (org-babel-expand-body:clojure): Inline
namespace setting.
(org-babel-clojure-cider-current-ns): Delete.
(ob-clojure-inf-clojure-filter-out): New variable.
(ob-clojure-inf-clojure-output): Use it.
(ob-clojure-eval-with-inf-clojure): Update the filter variable
depending on the current namespace.
2020-02-17 02:38:02 +01:00
Bastien 409bd498d1 ob-clojure.el: Enhancements and refactoring, removed session code
* lisp/ob-clojure.el (ob-clojure-inf-clojure-output): Filter
out spurious strings.
(ob-clojure-with-temp-expanded): New macro.
(ob-clojure-string-or-list, ob-clojure-eval-with-inf-clojure)
(ob-clojure-eval-with-cider, ob-clojure-eval-with-slime): New
functions.
(org-babel-execute:clojure): Use new functions.
(org-babel-execute:clojurescript): Fix docstring.
(org-babel-edit-prep:clojure)
(org-babel-clojure-initiate-session)
(org-babel-prep-session:clojure)
(org-babel-clojure-var-to-clojure)
(org-babel-variable-assignments:clojure): Delete function.
2020-02-16 23:46:49 +01:00
Bastien e2203692b7 ob-clojure.el: Support using inf-clojure.el
* lisp/ob-clojure.el (org-babel-clojure-backend): Allow to use
inf-clojure.el and set to nil by default.
(ob-clojure-inf-clojure-output): New function.
(org-babel-execute:clojure): Support using inf-clojure.el.
Remove the :show-process parameter.
(org-babel-execute:clojurescript)
(org-babel-edit-prep:clojure): Fix docstrings.
(org-babel-clojure-initiate-session): Make the session
parameter mandatory.  Initiate a cider session if needed.
2020-02-16 11:16:00 +01:00
Kyle Meyer e361c64043 ob-clojure: Drop recently added if-let* for compatibility
* lisp/ob-clojure.el (org-babel-edit-prep:clojure): Rewrite without
if-let*, which isn't available until Emacs 26.
2020-02-14 21:09:12 -05:00
stardiviner 003a7fc0b4 * lisp/ob-clojure.el: Add more ClojureScript src block support.
* lisp/ob-clojure.el: Add ClojureScript src block tangle extension and
header arguments support.

* lisp/ob-clojure.el (org-babel-edit-prep:clojure): Auto inject src
block :ns header argument into editing temporary src block buffer local.

TINYCHANGE
2020-02-13 16:56:02 +01:00
Robert Hambrock d37fc58150 * lisp/ob-clojure.el: Support for clojurescript src block execution.
* lisp/ob-clojure.el (org-babel-execute:clojurescript): New function to
Execute ClojureScript src block.

TINYCHANGE
2020-02-13 16:55:57 +01:00
Bastien b1f564b4b6 ob-clojure.el: Fix let binding expansion and comments removal
* lisp/ob-clojure.el (org-babel-expand-body:clojure): Remove
comment while expanding the body of the source block.
(org-babel-expand-body:clojure): Don't quote the value of src
block variables.
2020-02-12 11:24:07 +01:00
Kyle Meyer ff5fc050d3 Update copyright year to 2020 2020-01-01 13:38:46 -05:00
stardiviner bcdb2b5568 ob-clojure: Don't tangle with auto prepend ns statement
* lisp/ob-clojure.el: (org-babel-expand-body:clojure,
  org-babel-header-args:clojure): whether auto prepend Clojure (ns ..)
  statement depend on whether have :ns header argument specified.

* testing/test-ob-clojure.el: Add a test.
2019-01-21 21:17:47 +01:00
Bastien 7a22b8f93b Merge branch 'maint' 2019-01-01 11:54:01 +01:00
Bastien f584d37a67 Update copyright year 2019-01-01 11:50:56 +01:00
stardiviner 2c5df17ed1 ob-clojure: Support new CIDER using sesman to manage sessions
* ob-clojure.el (org-babel-clojure-initiate-session): Improve ob-clojure
  initialize session way to support CIDER new API.
* etc/ORG-NEWS: Add declare for new :session support feature.
2018-10-25 10:33:16 +02:00
stardiviner 4456dc8809 ob-clojure: Support `org-babel-initiate-session'
* ob-clojure.el (org-babel-clojure-initiate-session): Initialize session
for source block.
(org-babel-prep-session:clojure): Prepare Clojure session.
(org-babel-clojure-var-to-clojure): Convert header argument :var into
clojure variables definitions.
(org-babel-variable-assignments:clojure): Support assigning variables
when initializing a session.
2018-10-25 10:28:41 +02:00
Nicolas Goaziou 17edaf8c14 "src block" -> "source block" in documentation and comments
* etc/ORG-NEWS (Maxima: new headers ~:prologue~ and ~:epilogue~):
(Texinfo exports inline source blocks as ~@code{}~):
(Default lexical evaluation of emacs-lisp source blocks):
* lisp/ob-clojure.el (org-babel-clojure-default-ns):
* lisp/ob-core.el (org-babel-named-src-block-regexp-for-name):
(org-babel-current-src-block-location):
(org-babel-mark-block):
(org-babel-insert-result):
* lisp/ob-emacs-lisp.el (org-babel-default-header-args:emacs-lisp):
* lisp/ob-exp.el (org-babel-exp-process-buffer):
* lisp/ob-lob.el (org-babel-lob-ingest):
* lisp/ob-ref.el:
* lisp/org-element.el (org-element-object-restrictions):
(org-element-src-block-parser):
(org-element-inline-src-block-parser):
* lisp/org-lint.el:
(org-lint--checkers):
* lisp/org-pcomplete.el (pcomplete/org-mode/block-option/src):
* lisp/org-src.el (org-edit-inline-src-code):
* lisp/org.el (org-ctrl-c-ctrl-c):
(org-in-src-block-p):
(org-fill-element):
* lisp/ox-html.el (org-html--textarea-block):
(org-html-format-code):
* lisp/ox-latex.el (org-latex-minted-options):
(org-latex-custom-lang-environments):
* lisp/ox-md.el:
* lisp/ox-odt.el (org-odt-format-code):
* lisp/ox.el (org-export-collect-listings):
* testing/lisp/test-ob-exp.el (ob-exp/src-block-with-affiliated-keyword):
* testing/lisp/test-ob.el (test-ob/preserve-results-indentation):
  Correct "src block" occurrences when they do not specifically refer
  to the element type `src-block'.
2018-09-20 11:23:49 +02:00
Aaron Ecay 4afb7f747b Update declare-function calls for functions that have moved.
In cases where functions have moved from org.el into org-macs.el, it
is often possible to replace declare-function by (require 'org-macs)
2018-05-10 01:04:12 +01:00
stardiviner d7e12d1df7 * ob-clojure: Support :ns header argument
* lisp/ob-clojure.el (org-babel-clojure-default-ns): New variable.
(org-babel-clojure-cider-current-ns): New function.
(org-babel-expand-body:clojure):
(org-babel-execute:clojure): Support :ns header argument.

Remove optional parameter (cider-current-ns) to better handle
namespaces.
2018-04-14 18:21:55 +02:00
Tim Landscheidt b289a65be7 Use https for links to orgmode.org
TINYCHANGE
2018-01-19 18:14:58 +01:00
Kyle Meyer 3e1641ef0a Update copyright years 2018-01-07 00:27:54 -05:00
Paul Eggert ff0dcf52a5 Backport commit bc511a64f from Emacs
Prefer HTTPS to FTP and HTTP in documentation
bc511a64f6da9ab51acc7c8865e80c4a4cb655c2
Paul Eggert
Wed Sep 13 15:54:37 2017 -0700
2017-09-17 00:28:38 -04:00
Tim Cross 7ed93eba5a Fix incorrect argument call in ob-clojure.el
* lisp/ob-clojure.el (org-babel-execute:clojure): Use
  `cider-current-ns' instead of `cider-current-session'.

org-babel-execute-clojure was calling nrepl-sync-request:eval and
nrepl-request:eval with the session ID as the 3rd argument when the
functions expected a clojure namespace.

TINYCHANGE
2017-03-07 09:09:28 +01:00
Kyle Meyer 98d672de3d Update "25.2" defcustom :version's that remain in master
* lisp/ob-clojure.el (org-babel-clojure-sync-nrepl-timeout):
* lisp/org-agenda.el (org-agenda-show-future-repeats):
(org-agenda-prefer-last-repeat):
* lisp/org-bibtex.el (org-bibtex-headline-format-function):
* lisp/ox-publish.el (org-publish-sitemap-sort-folders):
* lisp/ox.el (org-export-global-macros): Change :version from "25.2"
  to "26.1".

As mentioned in 7c710f6f5, it looks like the goal is to sync Org
9.0.* (maint) with the Emacs master branch.  In that case, 26.1 won't
be correct for changes that are specific to Org's master branch, but
neither will 25.2.
2017-01-26 00:15:11 -05:00
Kyle Meyer 0d3683f2cd Merge branch 'maint' 2017-01-05 20:23:58 -05:00
Kyle Meyer 713f785017 Update copyright years 2017-01-05 20:19:37 -05:00
Nicolas Goaziou 2c466ebff2 ob-clojure: Normalize :show-process syntax
* lisp/ob-clojure.el (org-babel-execute:clojure): :show-process
  requires a non-nil (and non "no") value.
2016-11-19 07:39:05 +01:00